Synopsis "Protein Folding: Methods and Protocols (in English)"
1. Mutational Analysis of Protein Folding Transition States: Phi-valuesLuis Alberto Campos 2. Engineered Metal-Binding Sites to Probe Protein Folding Transition States: Psi Analysis Michael Baxa, Tobin R. Sosnick 3. Site-Specific Interrogation of Protein Structure and Stability Debopreeti Mukherjee, Ismail A. Ahmed, and Feng Gai 4. Purification and Handling of the Chaperonin GroEL Xiang Ye 5. -Folding free energy surfaces from Differential Scanning Calorimetry Jose M. Sanchez-Ruiz and Beatriz Ibarra-Molero 6. Fast Folding Kinetics using Nanosecond Laser-Induced Temperature Jump MethodsMichele Cerminara 7. Measurement of Submillisecond Protein Folding using Trp Fluorescence and Photochemical Oxidation David Witalka and Lisa J. Lapidus 8. Native State Hydrogen Exchange-Mass Spectrometry Methods to Probe Protein Folding and Unfolding Pooja Malhotra and Jayant B. Udgaonkar 9. Multi-Probe Equilibrium Analysis of Gradual (Un)Folding Processes Ginka S. Kubelka and Jan Kubelka 10. Nmr Analysis Of Protein Folding Interaction Networks Eva de Alba 11. NMR Relaxation Dispersion Methods for the Structural and Dynamic Analysis of Quickly Interconverting, Low-Populated Conformational Sub-States V. N. Sivanandam, Nicola D'Amelio, and Victor Muñoz 12. Native State Hydrogen Exchange-Mass Spectrometry Methods to Probe Protein Folding and Unfolding Pooja Malhotra and Jayant B. Udgaonkar 13. Single-Molecule Fluorescence Spectroscopy Approaches for Probing Fast Biomolecular Dynamics and Interactions Zifan Wang, Nivin Mothi, and Victor Muñoz 14. Theory and Analysis of Single-Molecule FRET experiments Irina V. Gopich and Hoi Sung Chung 15. Mechanochemical Evolution Of Disulfide Bonds In Proteins Jörg Schönfelder, Alvaro Alonso-Caballero, and Raul Perez-Jimenez 16. Coarse-Grained Simulations of Protein Folding: Bridging Theory and Experiments Vinícius G. Contessoto, Vinícius M. Oliveira, and Vitor B. P. Leite 17. Analysis of Molecular Dynamics Simulations of Protein Folding Robert B. Best 18. Atomistic Simulations of Thermal Unfolding Angel E Garcia 19. Molecular Simulations of Intrinsically Disordered Proteins and their Binding Mechanisms Xiakun Chu, Suhani Nagpal, and Victor Muñoz 20. Prediction of Folding and Unfolding Rates of Proteins with Simple Models David De Sancho and Victor Munoz 21. Predicting and Simulating Mutational Effects on Protein Folding Kinetics Athi N. Naganathan 22. Localization of Energetic Frustration in Proteins A. Brenda Guzovsky, Nicholas P. Schafer, Peter G. Wolynes, and Diego U. Ferreiro 23. Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field Adam K. Sieradzan, Cezary Czaplewski, P awel Krupa, Magdalena A. Mozolewska, Agnieszka Karczyńska, Agnieszka Lipska, Emilia A. Lubecka, Ewa Golaś, Tomasz Wirecki, Mariusz Makowski, Stanislaw Oldziej, and Adam Liwo
